
genewise output
Score 798.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|558173498|re    1 MHHAALLGGMIQDAPYYGWEVPQQVPHD                      
                     MHHAALLGGMI+DAPYYGWEVPQQVPHD                      
                     MHHAALLGGMIRDAPYYGWEVPQQVPHD                      
gi|432094826|gb47877 accggccggaacggcttgtggcccgccg                      
                     taaccttggttgaccaaggatcaatcaa                      
                     gccaggggcgcaccccccgggcggcgtc                      


gi|558173498|re   29                           RKMAEAVQNYVKSLNWGHRVQLQ 
                                               RKMAEAVQNYVKSLNWGHRVQLQ 
                                W:W[tgg]       RKMAEAVQNYVKSLNWGHRVQLQ 
gi|432094826|gb47961 TGGTGAGGG  Intron 1   CAGGaaaggggcatgatcatgccgccc 
                       <2-----[47963:48585]-2> gatcactaaatactaggagtata 
                                               gagaattaccggcgcggcgcggg 


gi|558173498|re   53 E                          KVSYFNMKASFVDEHVVRGVAK 
                     E                          KVSYFNMKASFVD+HVV GV K 
                     E           R:R[aga]       KVSYFNMKASFVDDHVVLGVGK 
gi|432094826|gb48656 gAGGTACTGA  Intron 2   CAGAagattaaagatgggcggcggga 
                     a  <2-----[48661:50001]-2> atgatatacgttaaatttgtga 
                     g                          acccttggcctgtccgtcacaa 


gi|558173498|re   77 GGKE                       TLLSAKHIVIATGGRPKYPTH  
                     GGKE                       TLLSAKHIVIATGGRPKYPTH  
                     GGKE                       TLLSAKHIVIATGGRPKYPTH  
gi|432094826|gb50069 ggagGTGAGCC  Intron 3   CAGacctgacagagaggacatcac  
                     ggaa<0-----[50081:50547]-0>cttccaatttccgggcaacca  
                     tgag                       tgtgtgctccttagaggccgc  


gi|558173498|re  102                        IEGAVEHGITSDDIFWLKESPGK    
                                            +EGAVEHGITSDDIFWLKESPGK    
                                            VEGAVEHGITSDDIFWLKESPGK    
gi|432094826|gb50611 GTGAGTG  Intron 4   TAGggggggcgaaaggattcagtcga    
                     <0-----[50611:53767]-0>tagctaagtcgaattgtaaccga    
                                            tatcgatgtattcccgggactaa    


gi|558173498|re  125                           LVVGAS                  
                                               LVVGAS                  
                                T:T[acg]       LVVGAS                  
gi|432094826|gb53837 ACGTAAGAC  Intron 5   CAGGtgggga                  
                       <2-----[53839:61989]-2> tttgcg                  
                                               ggtacc                  


gi|558173498|re  132                           VALECAGFLTGLGLDTTVMMRSI 
                                               VALECAGFLTGLGLD TVMMRSI 
                               Y:Y[tac]        VALECAGFLTGLGLDATVMMRSI 
gi|432094826|gb62009 TGTATCCT  Intron 6   CAGACggcgtggtcagcgcggagaacaa 
                      <1-----[62010:62792]-1>  tctagcgttcgtgtacctttggt 
                                               gcggcccccccgcgccccggccc 


gi|558173498|re  156 PLRGFDQ                       QMSALVTDYMASHGTRFLK 
                     PLRGFDQ                       QMS LVTDYMASHGTRFLK 
                     PLRGFDQ                       QMSTLVTDYMASHGTRFLK 
gi|432094826|gb62864 cccgtgcGTACAGC  Intron 7   CAGcatatgagtagtcgaatca 
                     ctggtaa<0-----[62885:65351]-0>atccttcaatccagcgtta 
                     tggctcg                       agacgcgccgttcacgtgg 


gi|558173498|re  182 GCTPLRVKRLPDNQLQVTWKDTASGREDMDTFNTVLWAI           
                     GC PLRVKRLPDNQLQVTWKD ASGRED DTFNTVLWAI           
                     GCIPLRVKRLPDNQLQVTWKDIASGREDTDTFNTVLWAI           
gi|432094826|gb65409 gtactagaaccgacccgatagagtgaggagataagctga           
                     ggtctgtagtcaaatatcgaatccggaacactacttgct           
                     ccccgagggcgccgtgccggccctcggcgcccccaggca           


gi|558173498|re  221                           RVPETRNLNLEKAGVNTNPESQK 
                                               RVPETRNLNLEKAGVNTNPESQK 
                               G:G[ggg]        RVPETRNLNLEKAGVNTNPESQK 
gi|432094826|gb65526 GGTAAGGT  Intron 8   CAGGGcgcgaaacatgagggaaacgaca 
                      <1-----[65527:78376]-1>  gtcacgatataacgtacacagaa 
                                               ataacatgtgggtagccttgtgg 


gi|558173498|re  245 ILVDAQEATSVPHIYAIGDTAE                       GRPE 
                     ILVDAQEATSVPHIYAIGDTAE                       GRPE 
                     ILVDAQEATSVPHIYAIGDTAE                       GRPE 
gi|432094826|gb78448 acgggcggatgccatgaggaggGTATGGC  Intron 9   CAGgccg 
                     tttacaaccctcatactgacca<0-----[78514:81735]-0>ggca 
                     cgttcgaccccctctctacagg                       ggtg 


gi|558173498|re  271 LTPTAILAGRLLAQRLCGQSSDLMDYDN                      
                     LTPTAILAGRLLAQRLCGQSSDLMDYDN                      
                     LTPTAILAGRLLAQRLCGQSSDLMDYDN                      
gi|432094826|gb81748 cacagacggaccgcactgcttgcagtgaGTGAGTG  Intron 10    
                     tccccttcggttcagtggaccattaaaa<0-----[81832:82251]  
                     gacatcgaggcgcggcccgcacggctct                      


gi|558173498|re  299    VPTTVFTPLEYGCVGLSEEAAVARHGKEHVE                
                        VPTTVFTPLEYGCVGLSEEAAVARHGK+HVE                
                        VPTTVFTPLEYGCVGLSEEAAVARHGKDHVE                
gi|432094826|gb82249 CAGgcaagtaccgtgtggctggggggccgagcgg                
                     -0>tcccttcctaaggtgtcaacctcgagaaata                
                        cccagccggatctggacgggtgaccagctgg                


gi|558173498|re  330                        VYHAYYKPLEFTVAERDASQCYIK   
                                            VYHAYYKPLEFTVAERDASQCYIK   
                                            VYHAYYKPLEFTVAERDASQCYIK   
gi|432094826|gb82345 GTAAGTC  Intron 11  CAGgtcgttaccgtagggcggtcttaa   
                     <0-----[82345:83962]-0>taacaaactatctcagaccagata   
                                            ttccctaacgcggtagtgcgtcag   


gi|558173498|re  354                        MVCLQKPPKPVLGLHFLGPNAGEVTQ 
                                            MVCLQKPPKPVLGLHFLGPNAGEVTQ 
                                            MVCLQKPPKPVLGLHFLGPNAGEVTQ 
gi|432094826|gb84035 GTGCGTG  Intron 12  CAGagtccaccacgcgcctcgcaggggac 
                     <0-----[84035:84203]-0>ttgtaaccacttgtattgcacgatca 
                                            ggcgggcaggggcgccgcccatatta 


gi|558173498|re  380 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI           K:K[aag]       CGASYAQVMRTVGIHPT 
gi|432094826|gb84282 gtgcgaAAGTAAGTC  Intron 13  TAGGtggttgcgacaggacca 
                     gtctgt  <2-----[84302:86739]-2> ggccacattgctgtacc 
                     attggc                          tgcccgggggcgccctc 


gi|558173498|re  404 CAEEVTKLRISKRSGLDPTVTGC                           
                     CAEEVTKLRISKRSGLDPTVTGC                           
                     CAEEVTKLRISKRSGLDPTVTGC                           
gi|432094826|gb86792 tggggaaccatactgtgcagagt                           
                     gcaatcatgtcagcgtacctcgg                           
                     tcgggcaggccgcacgcccgtcc                           


//
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|432094826|gb|KB111160.1|:subseq(332512,100080).pep
MHHAALLGGMIRDAPYYGWEVPQQVPHDWRKMAEAVQNYVKSLNWGHRVQLQERKVSYFN
MKASFVDDHVVLGVGKGGKETLLSAKHIVIATGGRPKYPTHVEGAVEHGITSDDIFWLKE
SPGKTLVVGASYVALECAGFLTGLGLDATVMMRSIPLRGFDQQMSTLVTDYMASHGTRFL
KGCIPLRVKRLPDNQLQVTWKDIASGREDTDTFNTVLWAIGRVPETRNLNLEKAGVNTNP
ESQKILVDAQEATSVPHIYAIGDTAEGRPELTPTAILAGRLLAQRLCGQSSDLMDYDNVP
TTVFTPLEYGCVGLSEEAAVARHGKDHVEVYHAYYKPLEFTVAERDASQCYIKMVCLQKP
PKPVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCAEEVTKLRISKRSGLD
PTVTGC
//
>gi|432094826|gb|KB111160.1|:subseq(332512,100080).[47877:86860].sp
ATGCACCACGCAGCGCTGCTGGGGGGCATGATCCGAGACGCCCCCTACTACGGCTGGGAG
GTGCCCCAGCAGGTCCCGCATGACTGGAGGAAAATGGCAGAAGCTGTTCAAAACTACGTG
AAGTCCCTGAACTGGGGGCACCGGGTCCAGCTGCAGGAGAGAAAAGTCAGCTACTTTAAT
ATGAAGGCCAGCTTTGTGGATGACCACGTGGTTCTCGGAGTCGGAAAAGGTGGGAAAGAG
ACTCTGCTTTCGGCTAAGCACATTGTCATCGCTACTGGAGGGAGACCGAAGTACCCCACG
CACGTTGAAGGTGCCGTGGAACATGGGATTACAAGTGATGACATCTTCTGGCTGAAGGAA
TCCCCTGGAAAAACGTTGGTGGTTGGAGCCAGCTACGTGGCCCTGGAGTGCGCCGGCTTC
CTCACCGGCCTGGGCCTGGACGCCACCGTCATGATGCGCAGCATCCCTCTGCGGGGCTTT
GACCAGCAAATGTCAACCTTGGTCACGGACTACATGGCTTCTCACGGAACCAGGTTTCTG
AAGGGCTGCATCCCCTTGAGAGTGAAGAGGCTCCCGGACAACCAGCTTCAGGTCACCTGG
AAGGACATCGCCTCTGGCAGGGAGGACACGGACACCTTCAACACCGTACTGTGGGCCATA
GGGCGAGTTCCAGAAACCAGAAATCTGAATTTGGAGAAGGCTGGAGTGAACACCAATCCT
GAGAGTCAGAAGATCCTGGTTGATGCCCAGGAAGCCACCTCCGTCCCCCATATCTATGCC
ATTGGAGACACAGCGGAGGGGCGGCCTGAGCTGACACCCACAGCTATCCTGGCAGGGAGG
CTCCTGGCCCAGAGGCTCTGCGGCCAGTCCTCAGACCTGATGGACTATGACAATGTCCCC
ACCACAGTGTTCACCCCGCTGGAATATGGCTGTGTGGGGCTATCCGAGGAGGCGGCTGTG
GCACGCCACGGAAAGGACCATGTGGAGGTTTATCACGCCTACTATAAACCACTCGAGTTC
ACGGTGGCTGAACGGGATGCGTCCCAGTGTTACATAAAGATGGTGTGCCTGCAGAAGCCC
CCAAAGCCGGTGCTGGGCCTGCACTTCCTGGGCCCCAACGCAGGTGAAGTTACTCAAGGA
TTTGCTCTGGGGATCAAGTGTGGGGCCTCCTACGCGCAGGTGATGCGGACCGTGGGCATC
CACCCTACCTGTGCCGAGGAGGTGACCAAACTGCGGATCTCCAAGCGCTCAGGCTTGGAC
CCCACCGTGACTGGCTGC
//
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	match	47877	86860	798.68	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	47877	47962	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	47963	48585	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	48586	48660	0.00	+	1	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	48661	50001	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	50002	50080	0.00	+	1	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	50081	50547	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	50548	50610	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	50611	53767	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	53768	53838	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	53839	61989	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	61990	62009	0.00	+	1	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	62010	62792	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	62793	62884	0.00	+	2	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	62885	65351	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	65352	65526	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	65527	78376	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	78377	78513	0.00	+	2	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	78514	81735	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	81736	81831	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	81832	82251	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	82252	82344	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	82345	83962	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	83963	84034	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	84035	84203	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	84204	84301	0.00	+	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	intron	84302	86739	0.00	+	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	86740	86860	0.00	+	1	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
//

genewise output
Score 21.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|558173498|re  361 PKPVLGLHFLGPNAG                                   
                     P P L L  LGP+AG                                   
                     PSPCLALRHLGPSAG                                   
gi|432094826|g-98884 ctctcgcactgctgg                                   
                     cccgtctgatgcccg                                   
                     cagcgaggtgcttta                                   


//
>gi|432094826|gb|KB111160.1|:subseq(332512,100080).pep
PSPCLALRHLGPSAG
//
>gi|432094826|gb|KB111160.1|:subseq(332512,100080).[98884:98838].sp
CCCTCACCGTGCCTGGCACTGAGGCATTTGGGCCCTTCTGCTGGA
//
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	match	98884	98840	21.28	-	.	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
gi|432094826|gb|KB111160.1|:subseq(332512,100080)	GeneWise	cds	98884	98840	0.00	-	0	gi|432094826|gb|KB111160.1|:subseq(332512,100080)-genewise-prediction-1
//
